publications
publications by categories in reversed chronological order. generated by jekyll-scholar.
2021
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Multi-omics Analysis Suggests Enhanced Epileptogenesis in the Cornu Ammonis 3 of the Pilocarpine Model of Mesial Temporal Lobe EpilepsyHippocampus Feb 2021
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Molecular Diagnosis in a Cohort of 114 Patients with Rare Skeletal DysplasiasAmerican Journal of Medical Genetics. Part C, Seminars in Medical Genetics Sep 2021
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A Field Guide to Cultivating Computational BiologyPLoS biology Oct 2021
2020
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Laser microdissection-based Microproteomics of the Hippocampus of a Rat Epilepsy Model Reveals Regional Differences in Protein AbundancesScientific Reports Mar 2020
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Methodological Differences Can Affect Sequencing Depth with a Possible Impact on the Accuracy of Genetic DiagnosisGenetics and Molecular Biology Mar 2020
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Blood plasma proteomic modulation induced by olanzapine and risperidone in schizophrenia patientsJournal of Proteomics Jul 2020
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Inherited Variations in Human pigmentation-related Genes Modulate Cutaneous Melanoma Risk and Clinicopathological Features in Brazilian PopulationScientific Reports Jul 2020
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The Brazilian Initiative on Precision Medicine (BIPMed): Fostering Genomic data-sharing of Underrepresented Populationsnpj Genomic Medicine Oct 2020
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Identification of Common and Divergent Gene Expression Signatures in Patients with Venous and Arterial Thrombosis Using Data from Public RepositoriesPloS One Oct 2020
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Circulating Lymphocytes and Monocytes Transcriptomic Analysis of Patients with Type 2 Diabetes mellitus, Dyslipidemia and PeriodontitisScientific Reports May 2020
2019
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Multimodal Analysis of SCN1A Missense Variants Improves Interpretation of Clinically Relevant Variants in Dravet SyndromeFrontiers in Neurology May 2019
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Copy Number Alterations Associated with Clinical Features in an Underrepresented Population with Breast CancerMolecular Genetics & Genomic Medicine Jul 2019
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Distribution of Local Ancestry and Evidence of Adaptation in Admixed PopulationsScientific Reports Sep 2019
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Blood Transcriptome Profile Induced by an Efficacious Vaccine Formulated with Salivary Antigens from Cattle Ticksnpj Vaccines Sep 2019
2018
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Dysregulation of NEUROG2 Plays a Key Role in Focal Cortical DysplasiaAnnals of Neurology Mar 2018
2017
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A Prediction Algorithm for Drug Response in Patients with Mesial Temporal Lobe Epilepsy Based on Clinical and Genetic InformationPloS One Mar 2017
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MicroRNA hsa-miR-134 Is a Circulating Biomarker for Mesial Temporal Lobe EpilepsyPloS One Mar 2017
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Comprehensive Molecular Characterization of Muscle-Invasive Bladder CancerCell Mar 2017
2016
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Working with Oligonucleotide ArraysMethods in Molecular Biology Mar 2016
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Cyclooxygenase-1 as a Potential Therapeutic Target for Seizure Suppression: Evidences from Zebrafish Pentylenetetrazole-Seizure ModelFrontiers in Neurology Mar 2016
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MicroRNAs-424 and 206 Are Potential Prognostic Markers in Spinal Onset Amyotrophic Lateral SclerosisJournal of the Neurological Sciences Sep 2016
2015
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Orchestrating high-throughput Genomic Analysis with BioconductorNature Methods Jan 2015
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Combined Analysis of SNP Array Data Identifies Novel CNV Candidates and Pathways in Ependymoma and MesotheliomaBioMed Research International Jan 2015
2014
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Reply: Resting Heart rate: an Independent Predictor of Congestive Heart FailureJournal of the American College of Cardiology Jul 2014
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Ordering of Mutations in Preinvasive Disease Stages of Esophageal CarcinogenesisNature Genetics Jun 2014
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Resting Heart Rate as Predictor for Left Ventricular Dysfunction and Heart failure: MESA (Multi-Ethnic Study of Atherosclerosis)Journal of the American College of Cardiology Apr 2014
2013
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The Challenges of Delivering Bioinformatics Training in the Analysis of high-throughput DataBriefings in Bioinformatics Sep 2013
2011
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Comparing Genotyping Algorithms for Illumina’s Infinium whole-genome SNP BeadChipsBMC Bioinformatics Mar 2011
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Using the R Package crlmm for Genotyping and Copy Number EstimationJournal of Statistical Software May 2011
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Chromosome-wide Mapping of DNA Methylation Patterns in Normal and Malignant Prostate Cells Reveals Pervasive Methylation of gene-associated and Conserved Intergenic SequencesBMC Genomics Jun 2011
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Performance Assessment of Copy Number Microarray Platforms Using a spike-in ExperimentBioinformatics (Oxford, England) Apr 2011
2010
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A framework for oligonucleotide microarray preprocessingBioinformatics Aug 2010
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A Multilevel Model to Address Batch Effects in Copy Number Estimation Using SNP ArraysBiostatistics Jul 2010
2009
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R/Bioconductor software for Illumina’s Infinium whole-genome genotyping BeadChipsBioinformatics Aug 2009
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Quantifying uncertainty in genotype callsBioinformatics Nov 2009
2008
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Estimating Genome-Wide Copy Number Using Allele-Specific Mixture ModelsJournal of Computational Biology Sep 2008
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Genome-wide Copy Number Alterations Detection in Fresh Frozen and Matched FFPE Samples Using SNP 6.0 ArraysGenes, Chromosomes & Cancer Nov 2008
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Validation and Extension of an Empirical Bayes Method for SNP Calling on Affymetrix MicroarraysGenome Biology Apr 2008
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Comprehensive high-throughput Arrays for Relative Methylation (CHARM)Genome Research Feb 2008
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Arterial Stiffness Is Associated with Regional Ventricular Systolic and Diastolic dysfunction: the Multi-Ethnic Study of AtherosclerosisArteriosclerosis, Thrombosis, and Vascular Biology Jan 2008
2007
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The Influence of Left Ventricular Size and Global Function on Regional Myocardial Contraction and Relaxation in an Adult Population Free of Cardiovascular Disease: A Tagged CMR Study of the MESA CohortJournal of Cardiovascular Magnetic Resonance Nov 2007
2006
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Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array dataBiostatistics Dec 2006
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Subclinical Atherosclerosis and Incipient Regional Myocardial Dysfunction in Asymptomatic individuals: the Multi-Ethnic Study of Atherosclerosis (MESA)Journal of the American College of Cardiology Jun 2006