Biostatistics and Computational Biology Lab

Institute of Mathematics, Statistics and Scientific Computing. University of Campinas. UNICAMP.

prof_pic.jpg

L203 Anexo II

Rua Sérgio Buarque de Holanda, 651

Campinas, SP, 13.148-218

The Biostatistics and Computational Biology Laboratory at University of Campinas (UNICAMP) in Brazil develops analytical methodologies to be applied on biomedical datasets. We have experience with the analysis of data generated high-throughput technologies.

news

Jan 15, 2016 A simple inline announcement with Markdown emoji! :sparkles: :smile:
Nov 7, 2015 A long announcement with details
Oct 22, 2015 A simple inline announcement.

selected publications

  1. Quantifying uncertainty in genotype calls
    Carvalho, Benilton S., Louis, Thomas A., and Irizarry, Rafael A.
    Bioinformatics Nov 2009
  2. A framework for oligonucleotide microarray preprocessing
    Carvalho, Benilton S., and Irizarry, Rafael A.
    Bioinformatics Aug 2010
  3. Orchestrating high-throughput Genomic Analysis with Bioconductor
    Huber, Wolfgang,¬†Carey, Vincent J,¬†Gentleman, Robert,¬†Anders, Simon,¬†Carlson, Marc,¬†Carvalho, Benilton S,¬†Bravo, Hector Corrada,¬†Davis, Sean,¬†Gatto, Laurent,¬†Girke, Thomas,¬†Gottardo, Raphael,¬†Hahne, Florian,¬†Hansen, Kasper D,¬†Irizarry, Rafael A,¬†Lawrence, Michael,¬†Love, Michael I,¬†MacDonald, James,¬†Obenchain, Valerie,¬†OleŇõ, Andrzej K,¬†Pag√®s, Herv√©,¬†Reyes, Alejandro,¬†Shannon, Paul,¬†Smyth, Gordon K,¬†Tenenbaum, Dan,¬†Waldron, Levi,¬†and Morgan, Martin
    Nature Methods Jan 2015
  4. Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer
    Robertson, A Gordon, Kim, Jaegil, Al-Ahmadie, Hikmat, Bellmunt, Joaquim, Guo, Guangwu, Cherniack, Andrew D, Hinoue, Toshinori, Laird, Peter W, Hoadley, Katherine A, Akbani, Rehan, Castro, Mauro A A, Gibb, Ewan A, Kanchi, Rupa S, Gordenin, Dmitry A, Shukla, Sachet A, Sanchez-Vega, Francisco, Hansel, Donna E, Czerniak, Bogdan A, Reuter, Victor E, Su, Xiaoping, Sa Carvalho, Benilton, Chagas, Vinicius S, Mungall, Karen L, Sadeghi, Sara, Pedamallu, Chandra Sekhar, Lu, Yiling, Klimczak, Leszek J, Zhang, Jiexin, Choo, Caleb, Ojesina, Akinyemi I, Bullman, Susan, Leraas, Kristen M, Lichtenberg, Tara M, Wu, Catherine J, Schultz, Nicholaus, Getz, Gad, Meyerson, Matthew, Mills, Gordon B, McConkey, David J, Network, TCGA Research, Weinstein, John N, Kwiatkowski, David J, and Lerner, Seth P
    Cell Jan 2017
  5. Distribution of Local Ancestry and Evidence of Adaptation in Admixed Populations
    Secolin, Rodrigo,¬†Mas-Sandoval, Alex,¬†Arauna, Lara R.,¬†Torres, F√°bio R.,¬†Araujo, T√Ęnia K.,¬†Santos, Marilza L.,¬†Rocha, Cristiane S.,¬†Carvalho, Benilton S.,¬†Cendes, Fernando,¬†Lopes-Cendes, Iscia,¬†and Comas, David
    Scientific Reports Sep 2019
  6. The Brazilian Initiative on Precision Medicine (BIPMed): Fostering Genomic data-sharing of Underrepresented Populations
    Rocha, Cristiane S., Secolin, Rodrigo, Rodrigues, Maíra R., Carvalho, Benilton S., and Lopes-Cendes, Iscia
    npj Genomic Medicine Oct 2020
  7. A Field Guide to Cultivating Computational Biology
    Way, Gregory P., Greene, Casey S., Carninci, Piero, Carvalho, Benilton S., Hoon, Michiel, Finley, Stacey D., Gosline, Sara J. C., Lȇ Cao, Kim-Anh, Lee, Jerry S. H., Marchionni, Luigi, Robine, Nicolas, Sindi, Suzanne S., Theis, Fabian J., Yang, Jean Y. H., Carpenter, Anne E., and Fertig, Elana J.
    PLoS biology Oct 2021
  8. Ordering of Mutations in Preinvasive Disease Stages of Esophageal Carcinogenesis
    Weaver, Jamie M J, Ross-Innes, Caryn S, Shannon, Nicholas, Lynch, Andy G, Forshew, Tim, Barbera, Mariagnese, Murtaza, Muhammed, Ong, Chin-Ann J, Lao-Sirieix, Pierre, Dunning, Mark J, Smith, Laura, Smith, Mike L, Anderson, Charlotte L, Carvalho, Benilton, O’Donovan, Maria, Underwood, Timothy J, May, Andrew P, Grehan, Nicola, Hardwick, Richard, Davies, Jim, Oloumi, Arusha, Aparicio, Sam, Caldas, Carlos, Eldridge, Matthew D, Edwards, Paul A W, Rosenfeld, Nitzan, Tavaré, Simon, and Fitzgerald, Rebecca C
    Nature Genetics Jun 2014
  9. Using the R Package crlmm for Genotyping and Copy Number Estimation
    Scharpf, Robert B., Irizarry, Rafael A., Ritchie, Matthew E., Carvalho, Benilton, and Ruczinski, Ingo
    Journal of Statistical Software May 2011
  10. Comprehensive high-throughput Arrays for Relative Methylation (CHARM)
    Irizarry, R. A., Ladd-Acosta, C., Carvalho, B., Wu, H., Brandenburg, S. A., Jeddeloh, J. A., Wen, B., and Feinberg, A. P.
    Genome Research Feb 2008
  11. Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data
    Carvalho, B., Bengtsson, H., Speed, T. P., and Irizarry, R. A.
    Biostatistics Dec 2006